species:   Rhsol
pid:       PID0506
parent:    Rhi-milR-143
paralog:   
locus:     KB317843.1:7809-7903
matures:   ['UGGGAGUAGAAGAGAUUGAAAGU', 'GCCCAGUCCUUAACUUCUUUG']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317843.1:7809-7903

4 out of bounds
101 alignments
41 proper strand
40 stranded perfect matches

      ************************                              **************************         
AAGGUACGCGCCCAGUCCUUAACUUCUUUGUUGGUUCGACAUAUAACUAAAAGACCUUCGCCUGGGAGUAGAAGAGAUUGAAAGUGUUUCACCUG
.((((((((...((((((((.((((((.((..((((................))))..))...))))))..))).)))))...))))...)))).
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAGU---------- l=23 a=1 c
---------GCCCAGUCCUUAACUUCUUUG----------------------------------------------------------------- l=21 a=0 c*
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAGUG--------- l=24 a=19 ma
--------CGCCCAGUCCUUAACUUCUUUG----------------------------------------------------------------- l=22 a=0 ma*

----------------------------------UUCGACAUAUAACUAAAAGACC--------------------------------------- l=22 a=1 
-----------------------------------------UAUAACUAAAAGACCUUCGC---------------------------------- l=20 a=1 
--------------------------------------------AACUAAAAGACCUUCGCCUGGGAG--------------------------- l=24 a=1 
-----------------------------------------------UAAAAGACCUUCGCCUGGG----------------------------- l=19 a=2 
-----------------------------------------------UAAAAGACCUUCGCCUGGGAG--------------------------- l=21 a=1 
-----------------------------------------------UAAAAGACCUUCGCCUGGGAGUAG------------------------ l=24 a=1 
--------------------------------------------------AAGACCUUCGCCUGGGAGUAGAAG--------------------- l=24 a=3 
---------------------------------------------------AGACCUUCGCCUGGGAGUAGAAG--------------------- l=23 a=2 
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAu------------ l=21 a=1 
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAA------------ l=21 a=1 
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAG----------- l=22 a=2 
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAGU---------- l=23 a=1 (c)
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAGUG--------- l=24 a=19 (ma)
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAGUGU-------- l=25 a=4 
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAGUGUU------- l=26 a=1 

mb-01011
ax-1001011
ku-01
ss-111110001000
fn-101
